Package: SNPkit
Title: S4 Tools for Reading and Organizing Genetic Data
Version: 0.1.0.9000
Authors@R: 
    c(person(given = "Vinícius",
             family = "Junqueira",
             role = c("aut", "cre"),
             email = "junqueiravinicius@hotmail.com"),
      person(given = "Roberto",
             family = "Higa",
             role = "aut",
             email = "roberto.higa@embrapa.br"),
      person(given = "Fernando Flores",
             family = "Cardoso",
             role = "aut",
             email = "fernando.cardoso@embrapa.br"),
      person(given = "Marcos Jun Iti",
             family = "Yokoo",
             role = "aut",
             email = "marcos.yokoo@embrapa.br"))
Description: Provides an integrated suite of tools for handling single
        nucleotide polymorphism (SNP) genotype data in large-scale
        genetic studies. Supports importing and merging genotype files,
        performing quality control on SNP markers and samples, and
        preparing data for downstream analyses using popular software
        such as 'FImpute' and 'PLINK'. Offers S4 classes and methods to
        efficiently encapsulate SNP data, along with utilities for
        generating genotype summary statistics and visualization.
        Additional functionalities include anticlustering approaches
        for batch effect control, automated script generation for
        external software, and streamlined workflows for large datasets
        commonly encountered in animal and plant breeding programs.
        Designed to facilitate reproducible and scalable SNP data
        analyses in quantitative and statistical genetics.
Depends: R (>= 4.1.0)
Imports: methods, ggplot2, dplyr, data.table, Rcpp, stringi, anticlust,
        grDevices, graphics, stats, utils, MASS, snpStats, magrittr,
        reshape2
LinkingTo: Rcpp
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL-3
URL: https://viniciusjunqueira.github.io/SNPkit/,
        https://github.com/viniciusjunqueira/SNPkit
BugReports: https://github.com/viniciusjunqueira/SNPkit/issues
RoxygenNote: 7.3.3
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://viniciusjunqueira.r-universe.dev
Date/Publication: 2026-06-26 13:55:53 UTC
RemoteUrl: https://github.com/viniciusjunqueira/snpkit
RemoteRef: HEAD
RemoteSha: dc13e8c310b71dea3a633432b0b39ca650068654
NeedsCompilation: yes
Packaged: 2026-06-27 07:23:40 UTC; root
Author: Vinícius Junqueira [aut, cre],
  Roberto Higa [aut],
  Fernando Flores Cardoso [aut],
  Marcos Jun Iti Yokoo [aut]
Maintainer: Vinícius Junqueira <junqueiravinicius@hotmail.com>